Microbiome of the nickel hyperaccumulators Lippia lupulina and Justicia Lanstyakii endemic to the ultramafic soils of Niquelândia
Meta-analysis. Amplicon sequencing. Illumina. Serpentine soils. Rhizosphere. Bioinformatics.
The ultramafic complex in Niquelândia, Goiás, hosts Brazil's largest nickel reserve and is home to endemic plant species capable of accumulating over 1000 mg kg-1 of Ni in their leaves, known as nickel hyperaccumulators. These plants represent a sustainable alternative to ore extraction. The microbiome plays a fundamental role in plant adaptation to the environment, acting as an amplifier of their adaptive capacity. The aim of this study is to investigate the microbiome of the nickel hyperaccumulator plant species Justicia lanstyakii and Lippia lupulina in the ultramafic complex of Niquelândia, using Illumina amplicon sequencing. Additionally, data published in the last five years were analyzed for a meta-analysis of the microbiome in ultramafic soils worldwide, aiming to identify a possible microbial signature in these environments. A total of 1080 ultramafic soil samples were analyzed globally through meta- analysis, using high-throughput Illumina sequencing data. Research articles available in the Scopus and Web of Science databases were selected for this analysis. Moreover, amplicon sequencing was performed to investigate the microbiome associated with the rhizosphere of the nickel hyperaccumulator plant species Justicia lanstyakii and Lippia lupulina from the ultramafic complex of Niquelândia, as well as the bulk soil of the plants. Our results revealed significant diversity of phyla, including Acidobacteria, Actinobacteria, Chlorobi, Chloroflexi, GAL15, Mixococota, Nitrospirae, Planctomycetes, Proteobacteria, and Verrucomicrobia, highlighting the richness of these soils. Bulk soil samples showed a predominance of phyla such as Acidobacteriota (23.5%), Spirochaetota (19%), and Chloroflexota (15.93%). In the rhizosphere of J. lanstyakii, the main associated phyla were Actinobacteriota (35.57%), Acidobacteriota (25.5%), and Verrucomicrobiota (17.97%), while in L. lupulina, they were Actinobacteriota (34.73%), Acidobacteriota (21.07%), and Verrucomicrobiota (13.17%). This study highlighted not only the diversity and structure of these microbiomes but also emphasized the notable enrichment and formation of more complex interactions.